PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s931481g009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family E2F/DP
Protein Properties Length: 423aa    MW: 46947.4 Da    PI: 4.5872
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s931481g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-2798163171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+kf++ll+++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  PDK_30s931481g009  98 RYDSSLGLLTKKFINLLKHAQDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 163
                        6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-2996165IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.27E-1798161IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-3498163IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-24100163IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.33E-47174281No hitNo description
SuperFamilySSF1440742.12E-32175280No hitNo description
PfamPF164214.3E-31179278IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPNYLGVPTP EKKIWLFYRL KRKTEQEDNE AAESSEWTTS PGYAEAATSS LLTPVSGKGG  60
RNYGRSKVAK YNKSGPLTPL SNAASPSSNP LTPVGTCRYD SSLGLLTKKF INLLKHAQDG  120
ILDLNKAAET LEVQKRRIYD ITNVLEGIGL IEKKLKNRIR WKGLDDSRPG ELDDDVSSLQ  180
AEVQNLTLQE RSVEDHINEM REKLRVLTED ENNQKWLYVT EADIKGLPCF QNDTLIAIKA  240
PYGTTLEVPD PDEAGEYPHR RYRIVLRSSM GPIDVYLVSQ YEEKFEEMSG VETPQRLPPA  300
SNSGSAENST VEVVTEEGRG KEMAPNVPDC QRMDSDPNAS HDFVGGMMKI VPSDVDTDAD  360
YWLLSDAGVS ITDMWKTAPE VQWDAMGRFN PEDFIASNAS TPRPETPPSG VIDAPSGTNS  420
TQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-2493164174PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00661PBMTransfer from Pp3c1_6880Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4131560.0HQ413156.1 Cocos nucifera E2F protein (E2F1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784098.10.0PREDICTED: transcription factor E2FB-like
SwissprotQ9FV711e-136E2FB_ARATH; Transcription factor E2FB
TrEMBLF5A6650.0F5A665_COCNU; E2F protein
STRINGGSMUA_Achr6P07100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-131E2F transcription factor 1